Development and maintenance of applications and tools for internal functionment of IBENS.
Sample data management system conception with data formating before implementation. Shiny (R) scripts development.
Common process development (annotations, formating, imputations) for the different research fields of laboratory, prepare genetic data for scientific computing, literature monitoring in science and technology.
Prepare genetic data for scientific computing and common informatics processes.
Identify and use public databases, develop common processes (annotations, formating, imputations) for the different research fields of laboratory, prepare genetic data for scientific computing, literature monitoring in science and technology.
Web interface development to align short peptids agains protein database for a specific organism. Show peptid sets that match with a same set of proteins and gather proteins information. Allow to determine interactions between genes and protein discovered.
Modelizing the phospholipid metabolism of Plasmodium falciparum
Mathematic approach development to modelise and explain the phospholipid metabolism of Plasmodium falciparum
Website management software conception
Development of a software to help website management with a graphical interface.
Galaxy, peak-calling, Analyse fonctionnelle et de transcriptome, ChIP-Seq and RNA-Seq crossing data
Functional proteomic and post-genomic, Functional genomic, Division and cell cycle, Computing ressources, Algorithmics, Programming, Database, Data Mining, Imaging
Immunology, Physiology, Biochemistry, Chemistry (organic, kinetics, enzymatics), Cellular biology (animal, plants), Microbio- logy, Genetics, Statistics
Interactive effect between ATPase-related genes and early-life tobacco smoke exposure on bronchial hyper-responsiveness detected in asthma-ascertained families
Dizier MH and Margaritte-Jeannin P and Pain L and Sarnowski C and Brossard M and Mohamdi H and Lavielle N and Babron MC and Just J and Lathrop M and Laprise C and Bouzigon E and Demenais F and Nadif R
Thorax, 2018 — 10.1136/thoraxjnl-2018-211797 / 30282721The COL5A3 and MMP9 genes interact in eczema susceptibility
Margaritte-Jeannin P and Babron MC and Laprise C and Lavielle N and Sarnowski C and Brossard M and Moffat M and Gagné-Ouellet V and Etcheto A and Lathrop M and Just J and Cookson WO and Bouzigon E and Demenais F and Dizier MH
Clin Exp Allergy, 2018 — 10.1111/cea.13064 / 29168291A comprehensive genome-wide analysis of melanoma Breslow thickness identifies interaction between CDC42 and SCIN genetic variants
Vaysse A and Fang S and Brossard M and Wei Q and Chen WV and Mohamdi H and Vincent-Fetita L and Margaritte-Jeannin P and Lavielle N and Maubec E and Lathrop M and Avril MF and Amos CI and Lee JE and Demenais F
Int J of Cancer, 2016 — 10.1002/ijc.30245 / 27347659Interaction between DNAH9 gene and early smoke exposure on bronchial hyper-responsiveness
Dizier MH and Nadif R and Margaritte-Jeannin P and Barton S and Sarnowski C and Gagné-Ouellet V and Brossard M and Lavielle N and Just J and Lathrop M and Holloway J and Laprise C and Bouzigon E and Demenais F
Eur Respir J, 2016 — 10.1183/13993003.00849-2015 / 26797031Integrated pathway and epistasis analysis reveals interactive effect of genetic variants at TERF1 and AFAP1L2 loci on melanoma risk
Brossard M and Fang S and Vaysse A and Wei Q and Chen W V. and Mohamdi H and Maubec E and Lavielle N and Galan P and Lathrop M and Avril MF and Lee J E. and Amos C I. and Demenais F
Int J of Cancer, 2015 — 10.1002/ijc.29570 / 25892537A common variant in RAB27A gene is associated with fractional exhaled nitric oxide levels in adults
Bouzigon E and Nadif R and Thompson EE and Concas MP and Kuldanek S and Du G and Brossard M and Lavielle N and Sarnowski C and Vaysse A and Dessen P and van der Valk RJP and Duijts L and Henderson AJ and Jaddoe VWV and de Jongste JC and GABRIEL consortium and EArly Genetics \& Lifecourse Epidemiology (EAGLE) Consortium and Casula S and Biino G and Dizier MH and Pin I and Matran R and Lathrop M and Pirastu M and Demenais F and Ober C
J Allergy Clin Immunol, 2015 — 10.1111/cea.12461 / 25431337The nuclear factor I/A NFIA gene is associated with the ashma plus rhinitis phenotype
Dizier MH and Margaritte-Jeanin P and Madore AM and Moffat M and Brossard M and Lavielle N and Sarnowski C and Just J and Cookson W and Lathrop M and Laprise C and Demenais F
J Allergy Clin Immunol, 2014 — 10.1016/j.jaci.2013.12.1074 / 24560411Combined pathway and gene-gene interaction analysis pinpoints biologically relevant genes for a major melanoma prognosis factor
Vaysse A and Fang S and Brossard M and Mohamdi H and Chen WV and Lavielle N and Maubec E and Wei Q and Lathrop M and Avril M-F and Amos CI and Lee JE and Demenais F and MELARISK and MDACC Melanoma Study Groups
American Society of Human Genetics (ASHG), 18-22 Oct. 2014, San Diego, USAInteractive effect between DNAH9 gene and early-life tobacco smode exposure in bronchial hyper-responsiveness
Dizier MH and Nadif R and Margaritte-Jeanin P and Barton SJ and Gagné-Ouellet V and Sarnowski C and Brossard M and Lavielle N and Just J and Lathrop M and Holloway JW and Laprise C and Bouzigon E and Demenais F
International Genetic Epidemiology Society (IGES), 28-30 Aug. 2014, Vienna, AustriaPathways and gene-gene interactions associated with melanoma risk
Brossard M and Fang S and Vaysse A and Wai Q and Mohamdi H and Chen WV and Lavielle N and Maubec E and Avril M-F and Lathrop M and Lee JE and Amos CI and Demenais F and MDACC Melanoma Study Groups
Meeting of the Melanoma Genetics Consortium (GenoMEL), 7-9 May 2014, Valencia, SpainPathay-based analysis of genome-wide SNP data reveals new candidate genes for susceptibility to melanoma
Brossard M and Vaysse A and Corda E and Jeannin P and Mohamdi H and Chaudru V and Lavielle N and Bressac-de Paillerets B and Avril MF and Lathrop M and Demenais F
Annual Meeting of the American Society of Human Genetics (ASHG), 6-10 Nov. 2012, San Francisco, USAActive member of Giroll collective (Gironde logiciel libre, giroll.org)
Writter and reviewer on blog bioinfo-fr.net
Editorial manager on blog bioinfo-fr.net
Member of RSG France-JeBif (Jeunes Bioinformaticiens de France) association
Board member of RSG France-JeBiF (Jeunes Bioinformaticiens de France) association
Active member of Parinux
Member of Labsquare
website management, web server managemont (Nginx), website creation (norore.fr), conception of web application BioInfuse, web application design of Alice project
image modification, photomontage, webdesign (The Gimp, Inkscape), drawing (Krita)
blogging, short stories and novel under pen name (amateur)